Publications

2021

Folgori L, Di Carlo D, Comandatore F, Piazza A, Witney AA, Bresesti I, Hsia
Y, Laing K, Monahan I, Bielicki J, Alvaro A, Zuccotti GV, Planche T, Heath PT,
Sharland M. Antibiotic Susceptibility, Virulome, and Clinical Outcomes in
European Infants with Bloodstream Infections Caused by Enterobacterales.
Antibiotics (Basel). 2021 Jun 11;10(6):706. doi: 10.3390/antibiotics10060706.
PMID: 34208220; PMCID: PMC8230887.

Piazza A, Principe L, Comandatore F, Perini M, Meroni E, Mattioni Marchetti
V, Migliavacca R, Luzzaro F. Whole-Genome Sequencing Investigation of a Large
Nosocomial Outbreak Caused by ST131 H30Rx KPC-Producing <i>Escherichia coli</i>
in Italy. Antibiotics (Basel). 2021 Jun 15;10(6):718. doi:
10.3390/antibiotics10060718. PMID: 34203731; PMCID: PMC8232337.

Comandatore F, Radaelli G, Montante S, Sacchi L, Clementi E, Epis S, Cafiso
A, Serra V, Pajoro M, Di Carlo D, Floriano AM, Stavru F, Bandi C, Sassera D.
Modeling the Life Cycle of the Intramitochondrial Bacterium “<i>Candidatus</i>
Midichloria mitochondrii” Using Electron Microscopy Data. mBio. 2021 Jun
29;12(3):e0057421. doi: 10.1128/mBio.00574-21. Epub 2021 Jun 22. PMID: 34154402.

Gabrieli P, Caccia S, Varotto-Boccazzi I, Arnoldi I, Barbieri G, Comandatore
F, Epis S. Mosquito Trilogy: Microbiota, Immunity and Pathogens, and Their
Implications for the Control of Disease Transmission. Front Microbiol. 2021 Apr
6;12:630438. doi: 10.3389/fmicb.2021.630438. PMID: 33889137; PMCID: PMC8056039.

Comandatore F, Damiani C, Cappelli A, Ribolla PEM, Gasperi G, Gradoni F,
Capelli G, Piazza A, Montarsi F, Mancini MV, Rossi P, Ricci I, Bandi C, Favia G.
Phylogenomics Reveals that <i>Asaia</i> Symbionts from Insects Underwent
Convergent Genome Reduction, Preserving an Insecticide-Degrading Gene. mBio.
2021 Mar 30;12(2):e00106-21. doi: 10.1128/mBio.00106-21. PMID: 33785632; PMCID:
PMC8092202.

Perini M, Batisti Biffignandi G, Di Carlo D, Pasala AR, Piazza A, Panelli S,
Zuccotti GV, Comandatore F. MeltingPlot, a user-friendly online tool for
epidemiological investigation using High Resolution Melting data. BMC
Bioinformatics. 2021 Feb 18;22(1):76. doi: 10.1186/s12859-021-04020-y. PMID:
33602119; PMCID: PMC7891011.

Cococcioni L, Panelli S, Varotto-Boccazzi I, Carlo DD, Pistone D, Leccese G,
Zuccotti GV, Comandatore F. IBDs and the pediatric age: Their peculiarities and
the involvement of the microbiota. Dig Liver Dis. 2021 Jan;53(1):17-25. doi:
10.1016/j.dld.2020.10.033. Epub 2020 Nov 11. PMID: 33189590.

Micheli V, Rimoldi SG, Romeri F, Comandatore F, Mancon A, Gigantiello A,
Perini M, Mileto D, Pagani C, Lombardi A, Gismondo MR. Geographical
reconstruction of the SARS-CoV-2 outbreak in Lombardy (Italy) during the early
phase. J Med Virol. 2021 Mar;93(3):1752-1757. doi: 10.1002/jmv.26447. Epub 2020
Sep 29. PMID: 32816316; PMCID: PMC7461481.

2020

Pasala AR, Perini M, Piazza A, Panelli S, Di Carlo D, Loretelli C, Cafiso A,
Inglese S, Gona F, Cirillo DM, Zuccotti GV, Comandatore F. Repeatability and
reproducibility of the wzi high resolution melting-based clustering analysis for
Klebsiella pneumoniae typing.
AMB Express. 2020 Dec 14;10(1):217. doi:
10.1186/s13568-020-01164-7. PMID: 33315212; PMCID: PMC7736600.

Serra V, Gammuto L, Nitla V, Castelli M, Lanzoni O, Sassera D, Bandi C,
Sandeep BV, Verni F, Modeo L, Petroni G. Morphology, ultrastructure, genomics,
and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced
endosymbiont “Candidatus Pinguicoccus supinus” sp. nov
. Sci Rep. 2020 Nov
20;10(1):20311. doi: 10.1038/s41598-020-76348-z. PMID: 33219271; PMCID:
PMC7679464.

Milani GP, Dioni L, Favero C, Cantone L, Macchi C, Delbue S, Bonzini M,
Montomoli E, Bollati V; UNICORN Consortium. Serological follow-up of SARS-CoV-2
asymptomatic subjects.
Sci Rep. 2020 Nov 18;10(1):20048. doi:
10.1038/s41598-020-77125-8. PMID: 33208819; PMCID: PMC7674414.

Cococcioni L, Panelli S, Varotto-Boccazzi I, Carlo DD, Pistone D, Leccese G,
Zuccotti GV, Comandatore F. IBDs and the pediatric age: Their peculiarities and
the involvement of the microbiota.
Dig Liver Dis. 2021 Jan;53(1):17-25. doi:
10.1016/j.dld.2020.10.033. Epub 2020 Nov 11. PMID: 33189590.

Varotto-Boccazzi I, Epis S, Arnoldi I, Corbett Y, Gabrieli P, Paroni M,
Nodari R, Basilico N, Sacchi L, Gramiccia M, Gradoni L, Tranquillo V, Bandi C.
Boosting immunity to treat parasitic infections: Asaia bacteria expressing a
protein from Wolbachia determine M1 macrophage activation and killing of
Leishmania protozoans
. Pharmacol Res. 2020 Nov;161:105288. doi:
10.1016/j.phrs.2020.105288. Epub 2020 Nov 4. PMID: 33160070.

D’Auria E, Panelli S, Lunardon L, Pajoro M, Paradiso L, Beretta S, Loretelli
C, Tosi D, Perini M, Bedogni G, Abdelsalam A, Fiorina P, Bandi C, Zuccotti GV.
Rice flour fermented with Lactobacillus paracasei CBA L74 in the treatment of
atopic dermatitis in infants: A randomized, double- blind, placebo- controlled
trial.
Pharmacol Res. 2021 Jan;163:105284. doi: 10.1016/j.phrs.2020.105284. Epub
2020 Nov 4. PMID: 33157233.

Panelli S, Corbella M, Gazzola A, Piralla A, Girello A, Rampelli S, Candela
M, Cambieri P. Tracking over time the developing gut microbiota in newborns
admitted to a neonatal intensive care unit during an outbreak caused by ESBL-
producing Klebsiella pneumoniae
. New Microbiol. 2020 Oct;43(4):186-190. Epub
2020 Oct 31. PMID: 33135084.

Chiappa G, Cafiso A, Monza E, Serra V, Olivieri E, Romeo C, Bazzocchi C.
Development of a PCR for Borrelia burgdorferi sensu lato, targeted on the groEL
gene
. Folia Parasitol (Praha). 2020 Oct 2;67:2020.026. doi:
10.14411/fp.2020.026. PMID: 33043891.

Rey F, Pandini C, Barzaghini B, Messa L, Giallongo T, Pansarasa O, Gagliardi
S, Brilli M, Zuccotti GV, Cereda C, Raimondi MT, Carelli S. Dissecting the
Effect of a 3D Microscaffold on the Transcriptome of Neural Stem Cells with
Computational Approaches: A Focus on Mechanotransduction
. Int J Mol Sci. 2020
Sep 15;21(18):6775. doi: 10.3390/ijms21186775. PMID: 32942778; PMCID:
PMC7555048.

Gazzola A, Panelli S, Corbella M, Merla C, Comandatore F, De Silvestri A,
Piralla A, Zuccaro V, Bandi C, Marone P, Cambieri P. Microbiota in
Clostridioides difficile-Associated Diarrhea: Comparison in Recurrent and
Non-Recurrent Infections
. Biomedicines. 2020 Sep 8;8(9):335. doi:
10.3390/biomedicines8090335. PMID: 32911854; PMCID: PMC7554755.

Micheli V, Rimoldi SG, Romeri F, Comandatore F, Mancon A, Gigantiello A,
Perini M, Mileto D, Pagani C, Lombardi A, Gismondo MR. Geographical
reconstruction of the SARS-CoV-2 outbreak in Lombardy (Italy) during the early
phase
. J Med Virol. 2021 Mar;93(3):1752-1757. doi: 10.1002/jmv.26447. Epub 2020
Sep 29. PMID: 32816316; PMCID: PMC7461481.

Aidos L, Cafiso A, Serra V, Vasconi M, Bertotto D, Bazzocchi C, Radaelli G,
Di Giancamillo A. How Different Stocking Densities Affect Growth and Stress
Status of Acipenser baerii Early Stage Larvae.
Animals (Basel). 2020 Jul
28;10(8):1289. doi: 10.3390/ani10081289. PMID: 32731504; PMCID: PMC7460203.

Rimoldi SG, Stefani F, Gigantiello A, Polesello S, Comandatore F, Mileto D,
Maresca M, Longobardi C, Mancon A, Romeri F, Pagani C, Cappelli F, Roscioli C,
Moja L, Gismondo MR, Salerno F. Presence and infectivity of SARS-CoV-2 virus in
wastewaters and rivers.
Sci Total Environ. 2020 Nov 20;744:140911. doi:
10.1016/j.scitotenv.2020.140911. Epub 2020 Jul 14. PMID: 32693284; PMCID:
PMC7358170.

Kashkouli M, Castelli M, Floriano AM, Bandi C, Epis S, Fathipour Y,
Mehrabadi M, Sassera D. Characterization of a novel Pantoea symbiont allows
inference of a pattern of convergent genome reduction in bacteria associated
with Pentatomidae.
Environ Microbiol. 2021 Jan;23(1):36-50. doi:
10.1111/1462-2920.15169. Epub 2020 Aug 27. PMID: 32686279.

Bonelli M, Bruno D, Brilli M, Gianfranceschi N, Tian L, Tettamanti G, Caccia
S, Casartelli M. Black Soldier Fly Larvae Adapt to Different Food Substrates
through Morphological and Functional Responses of the Midgut.
Int J Mol Sci.
2020 Jul 13;21(14):4955. doi: 10.3390/ijms21144955. PMID: 32668813; PMCID:
PMC7404193.

Milani GP, Montomoli E; UNICORN Consortium investigators, Bollati V, Albetti
B, Bandi C, Bellini T, Bonzini M, Buscaglia M, Cantarella C, Cantone L, Carugno
M, Casartelli S, Cavaletti G, D’Alessandro S, De Chiara F, Delbue S, Dioni L,
Eberini I, Favero C, Ferrari L, Ferraroni M, Galastri L, Galli C, Hoxha M,
Iodice S, La Vecchia C, Macchi C, Manini I, Marchi S, Mariani J, Pariani E,
Pesatori AC, Rota F, Ruscica M, Schioppo T, Tarantini L, Trombetta CM, Valsecchi
MG, Vicenzi M, Zanchetta G. SARS-CoV-2 infection among asymptomatic homebound
subjects in Milan, Italy.
Eur J Intern Med. 2020 Aug;78:161-163. doi:
10.1016/j.ejim.2020.06.010. Epub 2020 Jun 9. PMID: 32564906; PMCID: PMC7280100.

Perlini S, Canevari F, Cortesi S, Sgromo V, Brancaglione A, Contri E,
Pettenazza P, Salinaro F, Speciale F, Sechi G, Mare C, Cutti S, Novelli V,
Marena C, Muzzi A, Bruno R, Palo A; COVID19 IRCCS San Matteo Pavia Task Force.
Emergency Department and Out-of-Hospital Emergency System (112-AREU 118)
integrated response to Coronavirus Disease 2019 in a Northern Italy centre.
Intern Emerg Med. 2020 Jun 8:1–9. doi: 10.1007/s11739-020-02390-4. Epub ahead of
print. PMID: 32507926; PMCID: PMC7276336.

Panelli S, Epis S, Cococcioni L, Perini M, Paroni M, Bandi C, Drago L,
Zuccotti GV. Inflammatory bowel diseases, the hygiene hypothesis and the other
side of the microbiota: Parasites and fungi. Pharmacol Res. 2020 May
30;159:104962. doi: 10.1016/j.phrs.2020.104962. Epub ahead of print. PMID:
32480001.

Colaneri M, Sacchi P, Zuccaro V, Biscarini S, Sachs M, Roda S, Pieri TC,
Valsecchi P, Piralla A, Seminari E, Di Matteo A, Novati S, Maiocchi L, Pagnucco
L, Tirani M, Baldanti F, Mojoli F, Perlini S, Bruno R; COVID19 IRCCS San Matteo
Pavia Task Force. Clinical characteristics of coronavirus disease (COVID-19)
early findings from a teaching hospital in Pavia, North Italy, 21 to 28 February
2020. Euro Surveill. 2020 Apr;25(16):2000460. doi:
10.2807/1560-7917.ES.2020.25.16.2000460. PMID: 32347201; PMCID: PMC7189652.

Nodari R, Corbett Y, Varotto-Boccazzi I, Porretta D, Taramelli D, Epis S,
Bandi C. Effects of combined drug treatments on Plasmodium falciparum: In vitro
assays with doxycycline, ivermectin and efflux pump inhibitors. PLoS One. 2020
Apr 23;15(4):e0232171. doi: 10.1371/journal.pone.0232171. PMID: 32324826; PMCID:
PMC7179878.

Salpini R, Battisti A, Piermatteo L, Carioti L, Anastasiou OE, Gill US, Di
Carlo D, et al. Key mutations in the C-terminus of the HBV surface
glycoprotein correlate with lower HBsAg levels in vivo, hinder HBsAg
secretion in vitro and reduce HBsAg structural stability in the setting
of HBeAg-negative chronic HBV genotype-D infection. Emerg Microbes Infect. 2020
Dec;9(1):928-939. doi: 10.1080/22221751.2020.1757998. PMID: 32312174; PMCID:
PMC7269061.

Floriano AM, Rigamonti S, Comandatore F, Scaltriti E, Longbottom D,
Livingstone M, Laroucau K, Gaffuri A, Pongolini S, Magnino S, Vicari N. Complete
Genome Sequence of Chlamydia avium PV 4360/2, Isolated from a Feral Pigeon in
Italy. Microbiol Resour Announc. 2020 Apr 16;9(16):e01509-19. doi:
10.1128/MRA.01509-19. PMID: 32299890; PMCID: PMC7163028.

Panelli S, Capelli E, Lupo GFD, Schiepatti A, Betti E, Sauta E, Marini S,
Bellazzi R, Vanoli A, Pasi A, et al. Comparative Study of Salivary,
Duodenal, and Fecal Microbiota Composition Across Adult Celiac Disease. J Clin
Med. 2020 Apr 13;9(4):1109. doi: 10.3390/jcm9041109. PMID: 32294965; PMCID:
PMC7231226.

Peri AM, Piazza A, De Zan V, Carugati M, Muscatello A, Comandatore F, De
Lorenzis E, Pluderi M, Arghittu M, Cariani L, Cantù AP, Bandi C, Cugno M, Gori
A, Bandera A. Autochthonous ST405 NDM-5 producing Escherichia coli causing fatal
sepsis in Northern Italy. Int J Antimicrob Agents. 2020 May;55(5):105953. doi:
10.1016/j.ijantimicag.2020.105953. Epub 2020 Apr 11. PMID: 32289435.

Seminari E, Colaneri M, Sambo M, Gallazzi I, Di Matteo A, Roda S, Bruno R;
COVID19 IRCCS San Matteo Pavia Task Force. SARS Cov-2 infection in a renal-
transplanted patient: A case report. Am J Transplant. 2020 Apr 3. doi:
10.1111/ajt.15902. Epub ahead of print. PMID: 32243672.

Colaneri M, Seminari E, Piralla A, Zuccaro V, Filippo AD, Baldanti F, Bruno
R, Mondelli MU; COVID19 IRCCS San Matteo Pavia Task Force. Lack of SARS-CoV-2
RNA environmental contamination in a tertiary referral hospital for infectious
diseases in Northern Italy. J Hosp Infect. 2020 Mar 19:S0195-6701(20)30117-1.
doi: 10.1016/j.jhin.2020.03.018. Epub ahead of print. PMID: 32201338; PMCID:
PMC7156210.

Gona F, Comandatore F, Battaglia S, Piazza A, Trovato A, Lorenzin G, Cichero
P, Biancardi A, Nizzero P, Moro M, Cirillo DM. Comparison of core-genome MLST,
coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis.
Microb Genom. 2020 Mar 9. doi: 10.1099/mgen.0.000347. Epub ahead of print. PMID:
32149598.

Epis S, Varotto-Boccazzi I, Crotti E, Damiani C, Giovati L, Mandrioli M,
Biggiogera M, Gabrieli P, Genchi M, Polonelli L, Daffonchio D, Favia G, Bandi C.
Chimeric symbionts expressing a Wolbachia protein stimulate mosquito immunity
and inhibit filarial parasite development. Commun Biol. 2020 Mar 6;3(1):105.
doi: 10.1038/s42003-020-0835-2. PMID: 32144396; PMCID: PMC7060271.

Toffolatti SL, De Lorenzis G, Brilli M, Moser M, Shariati V, Tavakol E,
Maddalena G, Passera A, Casati P, et al. Novel Aspects on The Interaction Between Grapevine and Plasmopara viticola: Dual-RNA-Seq Analysis Highlights Gene Expression Dynamics in The Pathogen and The Plant During The Battle For Infection. Genes
(Basel). 2020 Feb 28;11(3):261. doi: 10.3390/genes11030261. PMID: 32121150;
PMCID: PMC7140796.

Bavaro DF, Di Carlo D, Rossetti B, Bruzzone B, Vicenti I, Pontali E, Zoncada
A, Lombardi F, Di Giambenedetto S, Borghi V, Pecorari M, Milini P, Meraviglia P,
Monno L, Saracino A. Pretreatment HIV drug resistance and treatment failure in
non-Italian HIV-1-infected patients enrolled in ARCA. Antivir Ther. 2020 Mar 2.
doi: 10.3851/IMP3349. Epub ahead of print. PMID: 32118584.

Aidos L, Cafiso A, Bertotto D, Bazzocchi C, Radaelli G, Di Giancamillo A.
How different rearing temperatures affect growth and stress status of Siberian
sturgeon Acipenser baerii larvae. J Fish Biol. 2020 Apr;96(4):913-924. doi:
10.1111/jfb.14280. Epub 2020 Feb 26. PMID: 32043574.

Perini M, Piazza A, Panelli S, Di Carlo D, Corbella M, Gona F, Vailati F,
Marone P, Cirillo DM, Farina C, Zuccotti G, Comandatore F. EasyPrimer: user-
friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on
wzi gene for fast Klebsiella pneumoniae typing. Sci Rep. 2020 Jan 28;10(1):1307.
doi: 10.1038/s41598-020-57742-z. PMID: 31992749; PMCID: PMC6987216.

Bielli A, Piazza A, Cento V, Comandatore F, Lepera V, Gatti M, Brioschi P,
Vismara C, Bandi C, Perno CF. In vivo acquisition and risk of inter-
species spread of bla-KPC-3-plasmid from Klebsiella
pneumoniae to Serratia marcescens in the lower respiratory tract. J
Med Microbiol. 2020 Jan;69(1):82-86. doi: 10.1099/jmm.0.001113. PMID: 31904319.

2019

Ferrari C, Corbella M, Gaiarsa S, Comandatore F, Scaltriti E, Bandi C,
Cambieri P, Marone P, Sassera D. Multiple Klebsiella pneumoniae KPC
Clones Contribute to an Extended Hospital Outbreak. Front Microbiol. 2019 Nov
29;10:2767. doi: 10.3389/fmicb.2019.02767. PMID: 31849904; PMCID: PMC6896718.

Risalde MA, Romero-Palomo F, Lecchi C, Ceciliani F, Bazzocchi C, Comazzi S,
Besozzi M, Gómez-Villamandos JC, Luzzago C. BVDV permissiveness and lack of
expression of co-stimulatory molecules on PBMCs from calves pre-infected with
BVDV. Comp Immunol Microbiol Infect Dis. 2020 Feb;68:101388. doi:
10.1016/j.cimid.2019.101388. Epub 2019 Nov 13. PMID: 31790941.

Lucchetti C, Genchi M, Venco L, Bazzocchi C, Kramer LH, Vismarra A.
Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria
immitis. MethodsX. 2019 Oct 31;6:2601-2605. doi: 10.1016/j.mex.2019.10.023.
PMID: 31763192; PMCID: PMC6861604.

Merla C, Rodrigues C, Passet V, Corbella M, Thorpe HA, Kallonen TVS, Zong Z,
Marone P, Bandi C, Sassera D, Corander J, Feil EJ, Brisse S. Description of
Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp.
nov. Front Microbiol. 2019 Oct 25;10:2360. doi: 10.3389/fmicb.2019.02360. PMID:
31708881; PMCID: PMC6824210.

Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales
AC, Saito R, Pongolini S, Brisse S, Feil EJ, Bandi C. Gene Composition as a
Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella
pneumoniae. Genome Biol Evol. 2019 Nov 1;11(11):3240-3251. doi:
10.1093/gbe/evz236. PMID: 31665331; PMCID: PMC6865855.

Chiodi A, Comandatore F, Sassera D, Petroni G, Bandi C, Brilli M. SeqDeχ: A
Sequence Deconvolution Tool for Genome Separation of Endosymbionts From Mixed Sequencing Samples. Front Genet. 2019 Sep 19;10:853. doi: 10.3389/fgene.2019.00853. PMID: 31608107; PMCID: PMC6761303.

Modica S, Redi D, Gagliardini R, Giombini E, Bezenchek A, Di Carlo D,
Maggiolo F, Lombardi F, Borghetti A, et al. Impact of NRTI resistance mutations on
virological effectiveness of antiretroviral regimens containing elvitegravir: a
multi-cohort study. J Antimicrob Chemother. 2020 Jan 1;75(1):194-199. doi:
10.1093/jac/dkz424. PMID: 31605107.

Gaiarsa S, Bitar I, Comandatore F, Corbella M, Piazza A, Scaltriti E, Villa
L, Postiglione U, Marone P, Nucleo E, Pongolini S, Migliavacca R, Sassera D. Can
Insertion Sequences Proliferation Influence Genomic Plasticity? Comparative
Analysis of Acinetobacter baumannii Sequence Type 78, a Persistent Clone
in Italian Hospitals. Front Microbiol. 2019 Sep 12;10:2080. doi:
10.3389/fmicb.2019.02080. PMID: 31572316; PMCID: PMC6751323.

Al-Khafaji AM, Armstrong SD, Varotto Boccazzi I, Gaiarsa S, Sinha A, Li Z,
Sassera D, Carlow CKS, Epis S, Makepeace BL. Rickettsia buchneri, symbiont of
the deer tick Ixodes scapularis, can colonise the salivary glands of its host.
Ticks Tick Borne Dis. 2020 Jan;11(1):101299. doi: 10.1016/j.ttbdis.2019.101299.
Epub 2019 Sep 9. PMID: 31542229.

Mameli C, Cattaneo C, Panelli S, Comandatore F, Sangiorgio A, Bedogni G,
Bandi C, Zuccotti G, Pagliarini E. Taste perception and oral microbiota are
associated with obesity in children and adolescents. PLoS One. 2019 Sep
11;14(9):e0221656. doi: 10.1371/journal.pone.0221656. PMID: 31509575; PMCID:
PMC6738620.

Negri A, Ferrari M, Nodari R, Coppa E, Mastrantonio V, Zanzani S, Porretta
D, Bandi C, Urbanelli S, Epis S. Gene silencing through RNAi and antisense Vivo-
Morpholino increases the efficacy of pyrethroids on larvae of Anopheles
stephensi. Malar J. 2019 Aug 28;18(1):294. doi: 10.1186/s12936-019-2925-5. PMID:
31462239; PMCID: PMC6712854.

Lucchetti C, Genchi M, Venco L, Menozzi A, Serventi P, Bertini S, Bazzocchi
C, Kramer LH, Vismarra A. Differential ABC transporter gene expression in adult
Dirofilaria immitis males and females following in vitro treatment with
ivermectin, doxycycline or a combination of both. Parasit Vectors. 2019 Aug
13;12(1):401. doi: 10.1186/s13071-019-3645-y. PMID: 31409391; PMCID: PMC6693208.

Drago L, Panelli S, Bandi C, Zuccotti G, Perini M, D’Auria E. What
Pediatricians Should Know Before Studying Gut Microbiota. J Clin Med. 2019 Aug
12;8(8):1206. doi: 10.3390/jcm8081206. PMID: 31409048; PMCID: PMC6723848.

Serra V, Krey V, Daschkin C, Cafiso A, Sassera D, Maxeiner HG, Modeo L,
Nicolaus C, Bandi C, Bazzocchi C. Seropositivity to Midichloria
mitochondrii (order Rickettsiales) as a marker to determine the exposure of
humans to tick bite. Pathog Glob Health. 2019 Jun;113(4):167-172. doi:
10.1080/20477724.2019.1651568. Epub 2019 Aug 9. PMID: 31397213; PMCID:
PMC6758646.

Scutari R, Alteri C, Vicenti I, Di Carlo D, Zuccaro V, Incardona F, Borghi
V, Bezenchek A, Andreoni M, Antinori A, Perno CF, Cascio A, De Luca A, Zazzi M,
Santoro MM; ARCA (Antiviral Response Cohort Analysis) Study Group. Evaluation of
HIV-1 integrase resistance emergence and evolution in patients treated with
integrase inhibitors. J Glob Antimicrob Resist. 2020 Mar;20:163-169. doi:
10.1016/j.jgar.2019.07.015. Epub 2019 Jul 19. PMID: 31330378.

Landinez-Torres A, Panelli S, Picco AM, Comandatore F, Tosi S, Capelli E. A
meta-barcoding analysis of soil mycobiota of the upper Andean Colombian agro-
environment. Sci Rep. 2019 Jul 12;9(1):10085. doi: 10.1038/s41598-019-46485-1.
PMID: 31300737; PMCID: PMC6625999.

Olivieri E, Epis S, Castelli M, Varotto Boccazzi I, Romeo C, Desirò A,
Bazzocchi C, Bandi C, Sassera D. Tissue tropism and metabolic pathways of
Midichloria mitochondrii suggest tissue-specific functions in the symbiosis with
Ixodes ricinus. Ticks Tick Borne Dis. 2019 Aug;10(5):1070-1077. doi:
10.1016/j.ttbdis.2019.05.019. Epub 2019 Jun 3. PMID: 31176662.

Castelli M, Sabaneyeva E, Lanzoni O, Lebedeva N, Floriano AM, Gaiarsa S,
Benken K, Modeo L, Bandi C, Potekhin A, Sassera D, Petroni G. Deianiraea, an
extracellular bacterium associated with the ciliate Paramecium, suggests an
alternative scenario for the evolution of Rickettsiales. ISME J. 2019
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Rimoldi SG, Comandatore F, Longhi E, Romeri F, Piazza A, Pagani C, Tamoni A,
Longobardi C, Negri C, Bestetti G, Gervasoni C, Perini M, Antinori S, Bandi C,
Gismondo MR. Genomic Characterization of an ST1153 PVL-producing Methicillin
Resistant Staphylococcus aureus Clinical Isolate in Italy. New Microbiol. 2019
Apr;42(2):129-131. Epub 2019 Apr 29. PMID: 31034079.

Chiellini C, Pasqualetti C, Lanzoni O, Fagorzi C, Bazzocchi C, Fani R,
Petroni G, Modeo L. Harmful Effect of Rheinheimera sp. EpRS3
(Gammaproteobacteria) Against the Protist Euplotes aediculatus
(Ciliophora, Spirotrichea): Insights Into the Ecological Role of Antimicrobial
Compounds From Environmental Bacterial Strains. Front Microbiol. 2019 Mar
22;10:510. doi: 10.3389/fmicb.2019.00510. PMID: 31001206; PMCID: PMC6457097.

Armenia D, Di Carlo D, Cozzi-Lepri A, Calcagno A, Borghi V, Gori C, Bertoli
A, Gennari W, Bellagamba R, Castagna A, Latini A, et al. Very high pre-therapy viral load
is a predictor of virological rebound in HIV-1-infected patients starting a
modern first-line regimen. Antivir Ther. 2019;24(5):321-331. doi:
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Salpini R, Battisti A, Colagrossi L, Di Carlo D, Fabeni L, Piermatteo L,
Cerva C, Lichtner M, Mastroianni C, Marignani M, et al. A snapshot of virological presentation and outcome of immunosuppression-driven HBV reactivation from real clinical practice: Evidence of a relevant risk of death and evolution from silent to chronic infection. J Viral Hepat. 2019 Jul;26(7):846-855. doi:
10.1111/jvh.13101. Epub 2019 May 14. PMID: 30974483.

Ruperti B, Botton A, Populin F, Eccher G, Brilli M, Quaggiotti S, Trevisan
S, Cainelli N, Guarracino P, Schievano E, Meggio F. Flooding Responses on
Grapevine: A Physiological, Transcriptional, and Metabolic Perspective. Front
Plant Sci. 2019 Mar 26;10:339. doi: 10.3389/fpls.2019.00339. PMID: 30972087;
PMCID: PMC6443911.

Del Prete R, Ronga L, Magrone R, Addati G, Abbasciano A, Di Carlo D,
Miragliotta G. Epidemiological evaluation of human papillomavirus genotypes and
their associations in multiple infections. Epidemiol Infect. 2019 Jan;147:e132.
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Mastrantonio V, Ferrari M, Negri A, Sturmo T, Favia G, Porretta D, Epis S,
Urbanelli S. Insecticide Exposure Triggers a Modulated Expression of ABC
Transporter Genes in Larvae of Anopheles gambiae s.s. Insects. 2019 Mar
5;10(3):66. doi: 10.3390/insects10030066. PMID: 30841542; PMCID: PMC6468849.

Hornok S, Szőke K, Meli ML, Sándor AD, Görföl T, Estók P, Wang Y, Tu VT,
Kováts D, Boldogh SA, Corduneanu A, Sulyok KM, Gyuranecz M, Kontschán J, Takács
N, Halajian A, Epis S, Hofmann-Lehmann R. Molecular detection of vector-borne
bacteria in bat ticks (Acari: Ixodidae, Argasidae) from eight countries of the
Old and New Worlds. Parasit Vectors. 2019 Jan 22;12(1):50. doi:
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Piazza A, Comandatore F, Romeri F, Brilli M, Dichirico B, Ridolfo A, Antona
C, Bandi C, Gismondo MR, Rimoldi SG. Identification of
blaVIM-1 Gene in ST307 and ST661 Klebsiella pneumoniae Clones in Italy: Old Acquaintances for New Combinations. Microb Drug Resist.
2019 Jun;25(5):787-790. doi: 10.1089/mdr.2018.0327. Epub 2018 Dec 27. PMID:
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Soulie C, Santoro MM, Charpentier C, Storto A, Paraskevis D, Di Carlo D,
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mutations in HIV-1-infected treatment-naive patients. J Antimicrob Chemother.
2019 Mar 1;74(3):614-617. doi: 10.1093/jac/dky464. PMID: 30476106.

Alonso DP, Mancini MV, Damiani C, Cappelli A, Ricci I, Alvarez MVN, Bandi C,
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2018

Alteri C, Fabeni L, Scutari R, Berno G, Di Carlo D, Gori C, et al. Genetic divergence of HIV-1 B subtype in Italy over the years 2003-2016 and impact on CTL escape prevalence. Sci Rep. 2018 Oct 24;8(1):15739.

Ciccocioppo R, Panelli S, Conti Bellocchi MC, Cangemi GC, Frulloni L, Capelli E, et al. The Transcriptomic Analysis of Circulating Immune Cells in a Celiac Family Unveils Further Insights Into Disease Pathogenesis. Front Med. 2018;5:182.

Di Lecce I, Bazzocchi C, Cecere JG, Epis S, Sassera D, Villani BM, et al.Patterns of Midichloria infection in avian-borne African ticks and their trans-Saharan migratory hosts. Parasit Vectors. 22 2018;11(1):106.

Gazzonis AL, Zanzani SA, Santoro A, Veronesi F, Olivieri E, Villa L, et al. Toxoplasma gondii infection in raptors from Italy: Seroepidemiology and risk factors analysis. Comp Immunol Microbiol Infect Dis. ottobre 2018;60:42–5.

Giovati L, Santinoli C, Ferrari E, Ciociola T, Martin E, Bandi C, et al. Candidacidal Activity of a Novel Killer Toxin from Wickerhamomyces anomalus against Fluconazole-Susceptible and -Resistant Strains. Toxins. 03 2018;10(2).

Mangia C, Vismarra A, Genchi M, Epis S, Bandi C, Grandi G, et al. Exposure to amitraz, fipronil and permethrin affects cell viability and ABC transporter gene expression in an Ixodes ricinus cell line. Parasit Vectors. 31 luglio 2018;11(1):437.

Martin E, Varotto Boccazzi I, De Marco L, Bongiorno G, Montagna M, Sacchi L, et al. The mycobiota of the sand fly Phlebotomus perniciosus: Involvement of yeast symbionts in uric acid metabolism. Environ Microbiol. marzo 2018;20(3):1064–77.

Panelli S, Schneider L, Comandatore F, Bandi C, Zuccotti GV, D’Auria E. Is there life in the meconium? A challenging, burning question. Pharmacol Res. novembre 2018;137:148–9.

Piazza A, Comandatore F, Romeri F, Pagani C, Floriano AM, Ridolfo A, et al. First Report of an ST410 OXA-181 and CTX-M-15 Coproducing Escherichia coli Clone in Italy: A Whole-Genome Sequence Characterization. Microb Drug Resist Larchmt N. ottobre 2018;24(8):1207–9.

Piazza A, Comandatore F, Romeri F, Pagani C, Mattioni Marchetti V, Brilli M, et al. Detection of ST1702 Escherichia coli blaNDM-5 and blaCMY-42 genes positive isolates from a Northern Italian hospital. New Microbiol. 2018;41(3):230–1.

Soulie C, Santoro MM, Charpentier C, Storto A, Paraskevis D, Di Carlo D, et al. Rare occurrence of doravirine resistance-associated mutations in HIV-1-infected treatment-naive patients. J Antimicrob Chemother. 23 novembre 2018;

2017

Comandatore, F., Corbella, M., Andreoli, G., Scaltriti, E., Aguzzi, M., Gaiarsa, S., Mariani, B., Morganti, M., Bandi, C., Fabbi, M., Marone, P., Pongolini, S., Sassera, D., 2017. Genomic Characterization Helps Dissecting an Outbreak of Listeriosis in Northern Italy. PLoS Curr. 9.

Corbella, M., Mariani, B., Ferrari, C., Comandatore, F., Scaltriti, E., Marone, P., Cambieri, P., 2017. Three cases of mcr-1-positive colistin-resistant Escherichia coli bloodstream infections in Italy, August 2016 to January 2017. Euro Surveill. Bull. Eur. Sur Mal. Transm. Eur. Commun. Dis. Bull. 22.

De Marco, L., Sassera, D., Epis, S., Mastrantonio, V., Ferrari, M., Ricci, I., Comandatore, F., Bandi, C., Porretta, D., Urbanelli, S., 2017. The choreography of the chemical defensome response to insecticide stress: insights into the Anopheles stephensi transcriptome using RNA-Seq. Sci. Rep. 7, 41312.

Varotto Boccazzi, I., Ottoboni, M., Martin, E., Comandatore, F., Vallone, L., Spranghers, T., Eeckhout, M., Mereghetti, V., Pinotti, L., Epis, S., 2017. A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production. PloS One 12, e0182533.