Selected publications

Floriano AM, Batisti Biffignandi G, Castelli M, Olivieri E, Clementi E, Comandatore F, Rinaldi L, Opara M, Plantard O, Palomar AM, Noël V, Vijay A, Lo N, Makepeace BL, Duron O, Jex A, Guy L, Sassera D. The evolution of intramitochondriality in Midichloria bacteria. Environ Microbiol. 2023 Jun 12. doi: 10.1111/1462-2920.16446. Epub ahead of print. PMID: 37305924.

Galli M, Nodari R, Perini M, Luconi E, Fois L, Vaglienti F, Bandi C, Biganzoli E, Comandatore F. A spatiotemporal reconstruction of the 1630 plague epidemic in Milan. iScience. 2023 Apr 20;26(5):106704. doi: 10.1016/j.isci.2023.106704. PMID: 37187697; PMCID: PMC10176250.

D’Auria E, Cattaneo C, Panelli S, Pozzi C, Acunzo M, Papaleo S, Comandatore F, Mameli C, Bandi C, Zuccotti G, Pagliarini E. Alteration of taste perception, food neophobia and oral microbiota composition in children with food allergy. Sci Rep. 2023 Apr 28;13(1):7010. doi: 10.1038/s41598-023-34113-y. PMID: 37117251; PMCID: PMC10147366.

Thorpe HA, Booton R, Kallonen T, Gibbon MJ, Couto N, Passet V, López-Fernández S, Rodrigues C, Matthews L, Mitchell S, Reeve R, David S, Merla C, Corbella M, Ferrari C, Comandatore F, Marone P, Brisse S, Sassera D, Corander J, Feil EJ. A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings. Nat Microbiol. 2022 Dec;7(12):2054-2067. doi: 10.1038/s41564-022-01263-0. pub 2022 Nov 21. PMID: 36411354; PMCID: PMC9712112.

Papaleo S, Alvaro A, Nodari R, Panelli S, Bitar I, Comandatore F. The red thread between methylation and mutation in bacterial antibiotic resistance: How third-eneration sequencing can help to unravel this relationship. Front Microbiol. 2022 Sep 15;13:957901. doi: 10.3389/fmicb.2022.957901. PMID: 36188005; PMCID: PMC9520237.

Perini M, Piazza A, Panelli S, Papaleo S, Alvaro A, Vailati F, Corbella M, Saluzzo F, Gona F, Castelli D, Farina C, Marone P, Cirillo DM, Cavallero A, Zuccotti GV, Comandatore F. Hypervariable-Locus Melting Typing: a Novel Approach for More Effective High-Resolution Melting-Based Typing, Suitable for Large Microbiological Surveillance Programs. Microbiol Spectr. 2022 Aug 31;10(4):e0100922. doi: 10.1128/spectrum.01009-22. Epub 2022 Aug 1. PMID:35913212; PMCID: PMC9430602.

Panelli S, Calcaterra V, Verduci E, Comandatore F, Pelizzo G, Borghi E,Bandi C, Zuccotti G. Dysbiosis in Children With Neurological Impairment and Long-Term Enteral Nutrition. Front Nutr. 2022 Jun 22;9:895046. doi: 10.3389/fnut.2022.895046. PMID: 35811980; PMCID: PMC9265901.

Buysse M, Floriano AM, Gottlieb Y, Nardi T, Comandatore F, Olivieri E,Giannetto A, Palomar AM, Makepeace BL, Bazzocchi C, Cafiso A, Sassera D, Duron O. A dual endosymbiosis supports nutritional adaptation to hematophagy in the invasive tick Hyalomma marginatum. Elife. 2021 Dec 24;10:e72747. doi: 10.7554/eLife.72747. PMID: 34951405; PMCID: PMC8709577.

Folgori L, Di Carlo D, Comandatore F, Piazza A, Witney AA, Bresesti I, HsiaY, Laing K, Monahan I, Bielicki J, Alvaro A, Zuccotti GV, Planche T, Heath PT,Sharland M. Antibiotic Susceptibility, Virulome, and Clinical Outcomes in European Infants with Bloodstream Infections Caused by Enterobacterales. Antibiotics (Basel). 2021 Jun 11;10(6):706. doi: 10.3390/antibiotics10060706. PMID: 34208220; PMCID: PMC8230887.

Comandatore F, Radaelli G, Montante S, Sacchi L, Clementi E, Epis S, CafisoA, Serra V, Pajoro M, Di Carlo D, Floriano AM, Stavru F, Bandi C, Sassera D. Modeling the Life Cycle of the Intramitochondrial Bacterium “Candidatus Midichloria mitochondrii” Using Electron Microscopy Data. mBio. 2021 Jun29;12(3):e0057421. doi: 10.1128/mBio.00574-21. Epub 2021 Jun 22. PMID: 34154402; PMCID: PMC8262999.

Comandatore F, Damiani C, Cappelli A, Ribolla PEM, Gasperi G, Gradoni F,Capelli G, Piazza A, Montarsi F, Mancini MV, Rossi P, Ricci I, Bandi C, Favia G. Phylogenomics Reveals that Asaia Symbionts from Insects Underwent Convergent Genome Reduction, Preserving an Insecticide-Degrading Gene. mBio. 2021 Mar 30;12(2):e00106-21. doi: 10.1128/mBio.00106-21. PMID: 33785632; PMCID: PMC8092202.

Perini M, Batisti Biffignandi G, Di Carlo D, Pasala AR, Piazza A, Panelli S,Zuccotti GV, Comandatore F. MeltingPlot, a user-friendly online tool forepidemiological investigation using High Resolution Melting data. BMCBioinformatics. 2021 Feb 18;22(1):76. doi: 10.1186/s12859-021-04020-y. PMID: 33602119; PMCID: PMC7891011.

Pasala AR, Perini M, Piazza A, Panelli S, Di Carlo D, Loretelli C, Cafiso A, Inglese S, Gona F, Cirillo DM, Zuccotti GV, Comandatore F. Repeatability and reproducibility of the wzi high resolution melting-based clustering analysis for Klebsiella pneumoniae typing. AMB Express. 2020 Dec 14;10(1):217. doi: 10.1186/s13568-020-01164-7. PMID: 33315212; PMCID: PMC7736600.

Cococcioni L, Panelli S, Varotto-Boccazzi I, Carlo DD, Pistone D, Leccese G, Zuccotti GV, Comandatore F. IBDs and the pediatric age: Their peculiarities and the involvement of the microbiota. Dig Liver Dis. 2021 Jan;53(1):17-25. doi:
10.1016/j.dld.2020.10.033. Epub 2020 Nov 11. PMID: 33189590.

Gona F, Comandatore F, Battaglia S, Piazza A, Trovato A, Lorenzin G, Cichero P, Biancardi A, Nizzero P, Moro M, Cirillo DM. Comparison of core-genome MLST, coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis.
Microb Genom. 2020 Apr;6(4):e000347. doi: 10.1099/mgen.0.000347. Epub 2020 Mar 9. PMID: 32149598; PMCID: PMC7276701.

Perini M, Piazza A, Panelli S, Di Carlo D, Corbella M, Gona F, Vailati F, Marone P, Cirillo DM, Farina C, Zuccotti G, Comandatore F. EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on
wzi gene for fast Klebsiella pneumoniae typing.
Sci Rep. 2020 Jan 28;10(1):1307. doi: 10.1038/s41598-020-57742-z. PMID: 31992749; PMCID: PMC6987216.

Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales AC, Saito R, Pongolini S, Brisse S, Feil EJ, Bandi C. Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella
. Genome Biol Evol. 2019 Nov 1;11(11):3240-3251. doi: 10.1093/gbe/evz236. PMID: 31665331; PMCID: PMC6865855.

Panelli S, Schneider L, Comandatore F, Bandi C, Zuccotti GV, D’Auria E. Is there life in the meconium? A challenging, burning question. Pharmacol Res. 2018 Nov;137:148-149. doi: 10.1016/j.phrs.2018.10.005. Epub 2018 Oct 5. PMID: 30296570.